CMD - Cotton Marker Database
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Tools

  • FSA File Viewers
    View original chromatograms (fsa files) of the cotton SSRs screened against the CMD standardized panel using STRand or Peak Scanner programs

  • BLAST Server
    Search your sequences against the cotton SSR microsatellite sequences using the BLAST algorithm

  • FASTA Server
    Search your sequences against the cotton SSR microsatellite sequences using the FASTA algorithm

  • CAP3 Server
    Assemble your sequences using the CAP3 assembly tool

  • SSR Server
    Identify SSRs and primers pairs in your sequences. An advanced server with primer parameter selection options will be available soon.

  • Blast2Go
    A universal tool for annotation, visualization and analysis in functional genomics research.

 

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